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Bioptimus Inference Server

GitHub
Knowledge Base

Overview

Bioptimus SDK

Get Started

Inference pipeline
Visualizing results
Performance tuning

Preprocessing

WSI processing
Tissue masking & tiling

Workflows

Tile embeddings & PCA
Spatial transcriptomics
Cohorts

Troubleshooting

Common issues
Logging
Support bundles

Reference

runtime

bioptimus.runtime.models

Server-side model classes that load exported .pt2 checkpoints.

bioptimus.runtime.loader

bioptimus.runtime.models.m_optimus

linkedin github website

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