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Bioptimus Inference Server

GitHub
Knowledge Base

Overview

Bioptimus SDK

Get Started

Inference pipeline
Visualizing results
Performance tuning

Preprocessing

WSI processing
Tissue masking & tiling

Workflows

Tile embeddings & PCA
Spatial transcriptomics
Cohorts

Troubleshooting

Common issues
Logging
Support bundles

Reference

utils

bioptimus.utils

Bioptimus SDK utilities — helpers for data download, visualization, and output loading.

bioptimus.runtime.server_model

bioptimus.utils.pytorch

linkedin github website

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