Documentation Index
Fetch the complete documentation index at: /llms.txt
Use this file to discover all available pages before exploring further.

Skip to main content

Bioptimus Documentation home page

Support
Request Access
Request Access

Bioptimus Inference Server

GitHub
Knowledge Base

Overview

Bioptimus SDK

Get Started

Inference pipeline
Visualizing results
Performance tuning

Preprocessing

WSI processing
Tissue masking & tiling

Workflows

Tile embeddings & PCA
Spatial transcriptomics
Cohorts

Troubleshooting

Common issues
Logging
Support bundles

Reference

inference

bioptimus.inference

Inference orchestration — slide-level and multi-slide pipelines.

bioptimus.extraction.wsi.types

bioptimus.inference.aggregate

linkedin github website

Powered byThis documentation is built and hosted on Mintlify, a developer documentation platform