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Bioptimus Inference Server

GitHub
Knowledge Base

Overview

Bioptimus SDK

Get Started

Inference pipeline
Visualizing results
Performance tuning

Preprocessing

WSI processing
Tissue masking & tiling

Workflows

Tile embeddings & PCA
Spatial transcriptomics
Cohorts

Troubleshooting

Common issues
Logging
Support bundles

Reference

preprocess

bioptimus.preprocess.wsi

WSI preprocessing utilities. Provides tissue-mask models and providers for per-slide mask generation.

bioptimus.preprocess.omics.transforms

bioptimus.preprocess.wsi.models.base

linkedin github website

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